list of the values for the options of profile plots for comparing smoothsCreates a list of the values for the options of deviations boxplots for comparing smooths.
Note that plots.by, facet.x and facet.y jointly
define the organization of the plots. The default settings are optimized for traitSmooth so that,
if you want to change any of these from their default settings when using args4devnboxes_plot with a function
other than traitSmooth, then it is recommended that you specify all of them to ensure that the complete set
has been correctly specified. Otherwise, the default settings will be those shown here and these may be different to the
default settings shown for the function with which you are using args4devnboxes_plot.
args4devnboxes_plot(plots.by = "Type",
facet.x = c("Method", "Tuning"), facet.y = ".",
collapse.facets.x = TRUE, collapse.facets.y = FALSE,
facet.labeller = NULL, facet.scales = "fixed",
angle.x = 0,
which.plots = "none",
ggplotFuncs = NULL,
...)A named list.
A character that gives the names of the set of
factors by which the data is to be grouped and a separate
plot produced for each group. If NULL, no groups are formed. If a
set of factors, such as Type, Tuning and
Method, that uniquely index the combinations of the
smoothing-parameter values is specified, then groups are formed for each
combination of the levels of the these factors, and a separate plot is
produced for each combination.
A character giving the names of the factors
to be used to form subsets to be plotted in separate columns of the
profiles plots and deviations boxplots. The default of "." results
in no split into columns.
A character giving the factors
to be used to form subsets to be plotted in separate rows of the
profiles plots and deviations boxplots. The default of "." results
in no split into rows.
A logical to indicate whether all variables
specified by facets.x are to be collapsed to a single variable.
Note that the smoothing-parameters factors, if present, are always collapsed.
A logical to indicate whether all variables
specified by facets.y are to be collapsed to a single variable.
Note that the smoothing-parameters factors, if present, are always collapsed.
A ggplot function for labelling the
facets of a plot produced using the ggplot function.
For more information see ggplot.
A character specifying whether the scales are shared
across all facets of a plot ("fixed"), or do they vary across rows (the
default, "free_x"), columns ("free_y"), or both rows and columns ("free")?
A numeric between 0 and 360 that gives the angle of the
x-axis text to the x-axis. It can also be set by supplying, in
ggplotFuncs, a theme function from ggplot2.
A logical indicating which plots are to be produced.
The options are either none or absolute.deviations and/or
relative.deviations. Boxplots of the absolute deviations
are specified by absolute.boxplots, the absolute deviations being
the values of a trait minus their smoothed values (observed - smoothed).
Boxplots of the relative deviations are specified by relative.boxplots,
the relative deviations being the absolute deviations divided by the
smoothed values of the trait.
A list, each element of which contains the
results of evaluating a ggplot function.
It is created by calling the list function with
a ggplot function call for each element.
These functions are applied in creating the ggplot
object for a boxplot.
allows arguments to be passed to other functions; not used at present.
Chris Brien
traitSmooth, probeSmooths, plotSmoothsComparison and args4chosen_plot.
args4devnboxes_plot(plots.by = "Type",
facet.x = "Tuning",
facet.y = c("Smarthouse", "Treatment.1"),
which.plots = "absolute")
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