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gsalib (version 2.1)

Utility Functions For GATK

Description

This package contains utility functions used by the Genome Analysis Toolkit (GATK) to load tables and plot data. The GATK is a toolkit for variant discovery in high-throughput sequencing data.

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Install

install.packages('gsalib')

Monthly Downloads

318

Version

2.1

License

MIT + file LICENSE

Maintainer

Geraldine Van der Auwera

Last Published

December 10th, 2014

Functions in gsalib (2.1)

gatkreport_test_v1.table

Test table for version 1.x GATKReport

gsa.read.gatkreportv0

Function to read in an old-style GATKReport

gsa.read.gatkreport

Function to read in a GATKReport

gsa.read.gatkreportv1

Function to read in a new-style GATKReport

gsalib-internal

Internal gsalib objects

gsalib-package

Utility functions for GATK