gsalib (version 2.2.1)

gsalib-package: Utility functions for GATK

Description

Utility functions for analysis of genome sequence data with the GATK

Author

Kiran Garimella

Maintainer: Louis Bergelson <[e-mail]>

Details

Package:	gsalib
Type:	Package
Version:	2.2
Date:	2015-03-17
License:	MIT
LazyLoad:	yes

This package is primarily meant to be used programmatically by GATK tools. However the gsa.read.gatkreport() function can be used to easily read in data from a GATKReport. A GATKReport is a multi-table document generated by GATK tools.

References

https://gatk.broadinstitute.org/hc/en-us/articles/360035532172-GATKReport-and-gsalib

Examples

test_file = system.file("inst", "extdata", "test_gatkreport.table", package = "gsalib");
report = gsa.read.gatkreport(test_file);