compute.jsd

this function is called by compute.spec.single to calculate the similarity
between two vectors

Analysis frameworks for pathway heterogeneity and pathway activity evaluation in single-cell data, including scRNA-seq data and spatial genomics data.

Qingnan, Liang 

gsdensity

Density-Based Gene Set Specificity Evaluation

Ken Chen

compute.jsd function

Arguments

5. compute the specificity of gene set when cell partition information is available;
the information could be clustering, sample origins, or other conditions
inspired by https://github.com/FloWuenne/scFunctions/blob/0d9ea609fa72210a151f7270e61bdee008e8fc88/R/calculate_rrs.R — compute.jsd

5. compute the specificity of gene set when cell partition information is available;
the information could be clustering, sample origins, or other conditions
inspired by https://github.com/FloWuenne/scFunctions/blob/0d9ea609fa72210a151f7270e61bdee008e8fc88/R/calculate_rrs.R

compute.jsd: 5. compute the specificity of gene set when cell partition information is available; the information could be clustering, sample origins, or other conditions inspired by https://github.com/FloWuenne/scFunctions/blob/0d9ea609fa72210a151f7270e61bdee008e8fc88/R/calculate_rrs.R

Description

Usage

Value

Arguments