sample.kld

this function is called by 'compute.kld' to calculate the kl-divergence between
sampled (background) gene set and the ref (all) gene set

Analysis frameworks for pathway heterogeneity and pathway activity evaluation in single-cell data, including scRNA-seq data and spatial genomics data.

Qingnan, Liang 

gsdensity

Density-Based Gene Set Specificity Evaluation

Ken Chen

sample.kld function

<dl><dt>density.df</dt>
<dd>density.df</dd>
<dt>ref</dt>
<dd>ref</dd>
<dt>len.gene.set</dt>
<dd>len.gene.set</dd></dl>

Arguments

this function is called by 'compute.kld' to calculate the kl-divergence between
sampled (background) gene set and the ref (all) gene set — sample.kld

<dl>

<dt>density.df</dt>
<dd>density.df</dd>


<dt>ref</dt>
<dd>ref</dd>


<dt>len.gene.set</dt>
<dd>len.gene.set</dd>

</dl>

sample.kld: this function is called by 'compute.kld' to calculate the kl-divergence between sampled (background) gene set and the ref (all) gene set

Description

Usage

Value

Arguments