format
The format is:
Formal class 'ciseStore' [package "gQTLBase"] with 4 slots
..@ reg :List of 13
.. ..$ id : chr "reg2"
.. ..$ version :List of 14
.. .. ..$ platform : chr "x86_64-pc-linux-gnu"
.. .. ..$ arch : chr "x86_64"
.. .. ..$ os : chr "linux-gnu"
.. .. ..$ system : chr "x86_64, linux-gnu"
.. .. ..$ status : chr "RC"
.. .. ..$ major : chr "3"
.. .. ..$ minor : chr "2.2"
.. .. ..$ year : chr "2015"
.. .. ..$ month : chr "08"
.. .. ..$ day : chr "09"
.. .. ..$ svn rev : chr "68931"
.. .. ..$ language : chr "R"
.. .. ..$ version.string: chr "R version 3.2.2 RC (2015-08-09 r68931)"
.. .. ..$ nickname : chr "Fire Safety"
.. .. ..- attr(*, "class")= chr "simple.list"
.. ..$ RNGkind : chr [1:2] "Mersenne-Twister" "Inversion"
.. ..$ db.driver : chr "SQLite"
.. ..$ db.options : list()
.. ..$ seed : int 584488375
.. ..$ file.dir : chr "/udd/stvjc/VM/GTEX_NEW/LUNGSHARD/reg2-files"
.. ..$ sharding : logi TRUE
.. ..$ work.dir : chr "/udd/stvjc/VM/GTEX_NEW/LUNGSHARD"
.. ..$ src.dirs : chr(0)
.. ..$ src.files : chr(0)
.. ..$ multiple.result.files: logi FALSE
.. ..$ packages :List of 8
.. .. ..$ BatchJobs :List of 1
.. .. .. ..$ version:Classes 'package_version', 'numeric_version' hidden list of 1
.. .. .. .. ..$ : int [1:2] 1 6
.. .. ..$ BSgenome :List of 1
.. .. .. ..$ version:Classes 'package_version', 'numeric_version' hidden list of 1
.. .. .. .. ..$ : int [1:3] 1 37 4
.. .. ..$ data.table :List of 1
.. .. .. ..$ version:Classes 'package_version', 'numeric_version' hidden list of 1
.. .. .. .. ..$ : int [1:3] 1 9 4
.. .. ..$ GenomeInfoDb :List of 1
.. .. .. ..$ version:Classes 'package_version', 'numeric_version' hidden list of 1
.. .. .. .. ..$ : int [1:3] 1 5 10
.. .. ..$ GenomicRanges :List of 1
.. .. .. ..$ version:Classes 'package_version', 'numeric_version' hidden list of 1
.. .. .. .. ..$ : int [1:3] 1 21 18
.. .. ..$ Homo.sapiens :List of 1
.. .. .. ..$ version:Classes 'package_version', 'numeric_version' hidden list of 1
.. .. .. .. ..$ : int [1:3] 1 3 1
.. .. ..$ SNPlocs.Hsapiens.dbSNP144.GRCh37:List of 1
.. .. .. ..$ version:Classes 'package_version', 'numeric_version' hidden list of 1
.. .. .. .. ..$ : int [1:3] 0 99 11
.. .. ..$ VariantAnnotation :List of 1
.. .. .. ..$ version:Classes 'package_version', 'numeric_version' hidden list of 1
.. .. .. .. ..$ : int [1:3] 1 15 21
.. ..- attr(*, "class")= chr "Registry"
..@ validJobs: int [1:143] 100 101 1 102 2 103 3 104 4 105 ...
..@ probemap :'data.frame': 33306 obs. of 2 variables:
.. ..$ probeid: chr [1:33306] "ENSG00000213315.4" "ENSG00000165914.10" "ENSG00000258884.1" "ENSG00000100784.5" ...
.. ..$ jobnum : num [1:33306] 100 100 100 100 100 100 100 100 100 100 ...
..@ rangeMap :Formal class 'GRanges' [package "GenomicRanges"] with 6 slots
.. .. ..@ seqnames :Formal class 'Rle' [package "S4Vectors"] with 4 slots
.. .. .. .. ..@ values : Factor w/ 22 levels "chr14","chr15",..: 1 2 3 2 3 2 3 2 3 2 ...
.. .. .. .. ..@ lengths : int [1:105] 2 1 1 1 1 1 1 1 1 1 ...
.. .. .. .. ..@ elementMetadata: NULL
.. .. .. .. ..@ metadata : list()
.. .. ..@ ranges :Formal class 'IRanges' [package "IRanges"] with 6 slots
.. .. .. .. ..@ start : int [1:164] 91894792 104564386 20028058 729679 29684952 9384563 45365173 21264308 64911405 31817476 ...
.. .. .. .. ..@ width : int [1:164] 13271331 2724490 10984049 9532801 16522793 12320890 19729726 11923836 14909880 14366763 ...
.. .. .. .. ..@ NAMES : chr [1:164] "100" "101" "101" "1" ...
.. .. .. .. ..@ elementType : chr "integer"
.. .. .. .. ..@ elementMetadata: NULL
.. .. .. .. ..@ metadata : list()
.. .. ..@ strand :Formal class 'Rle' [package "S4Vectors"] with 4 slots
.. .. .. .. ..@ values : Factor w/ 3 levels "+","-","*": 3
.. .. .. .. ..@ lengths : int 164
.. .. .. .. ..@ elementMetadata: NULL
.. .. .. .. ..@ metadata : list()
.. .. ..@ elementMetadata:Formal class 'DataFrame' [package "S4Vectors"] with 6 slots
.. .. .. .. ..@ rownames : NULL
.. .. .. .. ..@ nrows : int 164
.. .. .. .. ..@ listData :List of 1
.. .. .. .. .. ..$ jobid: chr [1:164] "100" "101" "101" "1" ...
.. .. .. .. ..@ elementType : chr "ANY"
.. .. .. .. ..@ elementMetadata: NULL
.. .. .. .. ..@ metadata : list()
.. .. ..@ seqinfo :Formal class 'Seqinfo' [package "GenomeInfoDb"] with 4 slots
.. .. .. .. ..@ seqnames : chr [1:22] "chr14" "chr15" "chr1" "chr16" ...
.. .. .. .. ..@ seqlengths : int [1:22] 107349540 102531392 249250621 90354753 81195210 243199373 78077248 59128983 198022430 191154276 ...
.. .. .. .. ..@ is_circular: logi [1:22] FALSE FALSE FALSE FALSE FALSE FALSE ...
.. .. .. .. ..@ genome : chr [1:22] "hg19" "hg19" "hg19" "hg19" ...
.. .. ..@ metadata : list()