gtexr (version 0.2.1)

get_genomic_features: Get Genomic Features

Description

GTEx API Portal documentation

Usage

get_genomic_features(.featureId, datasetId = "gtex_v8", .return_raw = FALSE)

Value

A tibble. Or a list if .return_raw = TRUE.

Arguments

.featureId

String. A genomic feature e.g. GENCODE ID, RSID or GTEx Variant ID.

datasetId

String. Unique identifier of a dataset. Usually includes a data source and data release. Options: "gtex_v8", "gtex_snrnaseq_pilot".

.return_raw

Logical. If TRUE, return the raw API JSON response. Default = FALSE

Details

This endpoint takes a path parameter "featureId".

See Also

Other Reference Genome Endpoints: get_exons(), get_gene_search(), get_genes(), get_gwas_catalog_by_location(), get_neighbor_gene(), get_transcripts()

Examples

if (FALSE) { # identical(Sys.getenv("IN_PKGDOWN"), "true")
# gene symbol
get_genomic_features("brca1")

# GENCODE ID
get_genomic_features("ENSG00000132693.12")

# RSID
get_genomic_features("rs1815739")

# GTEx variant ID
get_genomic_features("chr11_66561023_G_GTTA_b38")
}