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gtrellis (version 1.4.2)

Genome Level Trellis Layout

Description

Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.

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Version

Version

1.4.2

License

GPL (>= 2)

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Maintainer

Zuguang Gu

Last Published

April 25th, 2016

Functions in gtrellis (1.4.2)

add_heatmap_track

add heatmap to a new track
gtrellis_show_index

Show index on each cell
get_cell_meta_data

Get meta data in a cell
add_points_track

add points to a new or exsited track
add_ideogram_track

Add ideogram track
gtrellis_layout

Initialize genome-level Trellis layout
add_segments_track

add segments to a new or exsited track
add_track

Add self-defined graphics track by track
current_track

The index of current track
add_lines_track

add lines to a new or exsited track
add_rect_track

add retangles to a new or exsited track