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gwascat (version 2.4.2)
representing and modeling data in the EMBL-EBI GWAS catalog
Description
Represent and model data in the EMBL-EBI GWAS catalog.
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Version
2.4.2
2.4.1
2.2.1
1.12.0
1.10.0
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Version
2.4.2
License
Artistic-2.0
Maintainer
Vince Carey
Last Published
January 1st, 1970
Functions in gwascat (2.4.2)
Search functions
gwcex2gviz
Prepare salient components of GWAS catalog for rendering with Gviz
gwascat-package
representing and modeling data in the NHGRI GWAS catalog
gwaswloc-class
Class
"gwaswloc"
traitsManh
use ggbio facilities to display GWAS results for selected traits in genomic coordinates
topTraits
operations on GWAS catalog
ldtagr
expand a list of variants by including those in a VCF with LD exceeding some threshold
gwastagger
data on 1000 genomes SNPs that 'tag' GWAS catalog entries
gwdf_2012_02_02
internal data frame for NHGRI GWAS catalog
riskyAlleleCount
given a matrix of subjects x SNP calls, count number of risky alleles
makeCurrentGwascat
read NHGRI GWAS catalog table and construct associated GRanges instance
obo2graphNEL
convert a typical OBO text file to a graphNEL instance (using Term elements)
bindcadd_snv
bind CADD scores of Kircher et al. 2014 to a GRanges instance
locon6
location information for 10000 SNPs probed on Affy GW 6.0