get_variants_by_efo_id

Gets variants whose phenotypic trait is matched by EFO identifiers.

internal

'GWAS' R 'API' Data Download.
This package provides easy access to the 'NHGRI'-'EBI' 'GWAS' Catalog data by
accessing the 'REST' 'API' <https://www.ebi.ac.uk/gwas/rest/docs/api/>.

Ramiro Magno

gwasrapidd

'REST' 'API' Client for the 'NHGRI'-'EBI' 'GWAS' Catalog

Ana-Teresa Maia

CINTESIS 

Pattern Institute 

get_variants_by_efo_id function

<dl><dt>efo_id</dt>
<dd>A character vector of <a href="https://www.ebi.ac.uk/efo/">EFO</a>
identifiers.</dd>
<dt>verbose</dt>
<dd>Whether the function should be verbose about the different
queries or not.</dd>
<dt>warnings</dt>
<dd>Whether to print warnings.</dd>
<dt>page_size</dt>
<dd>An integer scalar indicating the
<a href="https://www.ebi.ac.uk/gwas/rest/docs/api#_paging_resources">page</a>
value to be used in the JSON requests, can be between <code>1</code> and
<code>1000</code>.</dd></dl>

Arguments

Get GWAS Catalog studies by EFO identifier — get_variants_by_efo_id

<dl>

<dt>efo_id</dt>
<dd>A character vector of <a href='https://www.ebi.ac.uk/efo/'>EFO</a>
identifiers.</dd>


<dt>verbose</dt>
<dd>Whether the function should be verbose about the different
queries or not.</dd>


<dt>warnings</dt>
<dd>Whether to print warnings.</dd>


<dt>page_size</dt>
<dd>An integer scalar indicating the
<a href='https://www.ebi.ac.uk/gwas/rest/docs/api#_paging_resources'>page</a>
value to be used in the JSON requests, can be between <code>1</code> and
<code>1000</code>.</dd>

</dl>

get_variants_by_efo_id: Get GWAS Catalog studies by EFO identifier

Description

Usage

Value

Arguments