get_sig_genes

<p>A character vector indicating keywords for a group of signatures.
The default (<code>"all"</code>) will cause the function to check for all the signatures
implemented in <code>hacksig</code>.</p>

keywords

<p>Obtain gene signatures implemented in <code>hacksig</code> as a named list of gene symbols.</p>

A collection of cancer transcriptomics gene signatures as well as a
simple and tidy interface to compute single sample enrichment scores either
with the original procedure or with three alternatives:
the "combined z-score" of Lee et al. (2008) <doi:10.1371/journal.pcbi.1000217>,
the "single sample GSEA" of Barbie et al. (2009) <doi:10.1038/nature08460> and
the "singscore" of Foroutan et al. (2018) <doi:10.1186/s12859-018-2435-4>.
The 'get_sig_info()' function can be used to retrieve information about each
signature implemented.

Andrea Carenzo

hacksig

get_sig_genes: Get signature gene identifiers

Description

Usage

Arguments

Value

See Also

Examples