Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of susceptibilities, distribution of complexities with statistics, pathotype frequency distribution, as well as diversity indices for pathotypes. This package is meant to be a direct replacement for Herrmann, Löwer and Schachtel's (1999) tools:::Rd_expr_doi("10.1046/j.1365-3059.1999.00325.x") Habgood-Gilmour Spreadsheet, 'HaGiS', previously used for pathotype analysis.
Maintainer: Adam H. Sparks adamhsparks@gmail.com (ORCID)
Authors:
Austin G. McCoy mccoyaus@msu.edu (ORCID) [conceptor]
Zachary Noel noelzach@msu.edu (ORCID) [conceptor]
Martin Chilvers chilvers@msu.edu (ORCID) [thesis advisor]
Jari Oksanen jhoksane@gmail.com (Contributed fix for the use of 'vegan' in betadiversity vignette.)
Other contributors:
Zhian N. Kamvar (ORCID) [contributor, reviewer]
Michigan Soybean Promotion Committee [funder, copyright holder]
Project GREEEN [funder, copyright holder]
North Central Soybean Research Program [funder, copyright holder]
Grains Research and Development Corporation (ROR) (GRDC Project DAQ00186 and GRDC Project CUR2210-005OPX (AAGI-CU)) [funder, copyright holder]
Michigan State University (ROR) (MSU AgBioResearch and MSU Extension) [funder, copyright holder]
University of Southern Queensland (ROR) [funder, copyright holder]
Curtin University (ROR) [funder, copyright holder]