EMnull

EMvar

IPhi

IPhiGamma

IPhiGaussian

SPhi

SPhiGamma

SPhiGaussian

codeHaploDM

getHaplos

getPhenos

handleMissings

isHetero

isIn

isMissing

isMultiHetero

makeHaploLab

makeHaploLabN

mlPhi

mlPhiGamma

momentPhiGamma

pYgivenX

RecodeHaplos

internal

hapassoc-internal

The following R functions are used for likelihood inference of trait associations with haplotypes and other covariates in generalized linear models.  The functions accommodate uncertain haplotype phase and can handle missing genotypes at some SNPs.

M Pratola

hapassoc

Likelihood inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm

hapassoc-internal function

Internal hapassoc functions

hapassoc-internal: Internal hapassoc functions

Description

Arguments

Details