hypoDat

Simulated binary trait data used to illustrate the hapassoc package.

datasets

The following R functions are used for likelihood inference of trait associations with haplotypes and other covariates in generalized linear models.  The functions accommodate uncertain haplotype phase and can handle missing genotypes at some SNPs.

S Blay

hapassoc

Likelihood inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm

hypoDat function

Matrix with columns:
<tabular>rlll</tabular>{
[,1] 	affected 	numeric 	affection status (1=yes, 0=no) [,3] 	attr 	numeric 	simulated quantitative attribute [,5] 	M1.1 	numeric 	the first allele of hypothetical SNP M1 [,6] 	M1.2 	numeric 	the second allele of hypothetical SNP M1 [,5] 	M2.1 	numeric 	the first allele of hypothetical SNP M2 [,6] 	M2.2 	numeric 	the second allele of hypothetical SNP M2 [,7] 	M3.1 	numeric 	the first allele of hypothetical SNP M3 [,8] 	M3.2 	numeric 	the second allele of hypotetical SNP  M3 }

hypoDat: Simulated data for a hypothetical binary trait

Description

Usage

Arguments

format