haplo.hpp

'haplo.hpp' obtains summary statistics of phase ambiguity. The
 proportion of subjects whose highest posterior diplotype probability
 is greater than or equal to a specified probability is reported.

models

regression

Haplotype and covariate relative risks in case-control data are estimated by weighted logistic regression. Diplotype probabilities, which are estimated by EM computation with progressive insertion of loci, are utilized as weights. French et al. (2006) <doi:10.1002/gepi.20161>.

Benjamin French

haplo.ccs

Estimate Haplotype Relative Risks in Case-Control Data

Shawn Garbett

Thomas Lumley

haplo.hpp function

<dl>
 <dt>model</dt>
<dd>a fitted model of class '"haplo.ccs"'.</dd>
 <dt>prob</dt>
<dd>the probability to which to compare the highest posterior
 diplotype probability for each subject. Note that the default
 probability is 0.95. Note also that either a single probability or a
 list of probabilities may be specified.</dd>
</dl>

Arguments

Benjamin French and Thomas Lumley, University of Washington

Author

Obtain Summaries of Phase Ambiguity — haplo.hpp

<dl>


 <dt>model</dt>
<dd>a fitted model of class '"haplo.ccs"'.</dd>


 <dt>prob</dt>
<dd>the probability to which to compare the highest posterior
 diplotype probability for each subject. Note that the default
 probability is 0.95. Note also that either a single probability or a
 list of probabilities may be specified.</dd>


</dl>

Benjamin French and Thomas Lumley, University of Washington

haplo.hpp: Obtain Summaries of Phase Ambiguity

Description

Usage

Value

Arguments

Author

References

See Also

Examples