haplo.chistat

Vector of codes for the first of a haplotype pair per subject

Vector of codes for the second of a haplotype pair per subject

Posterior probability of the haplotype pair

post

The case-control status (1 for cases; 0 for controls)

Number of haplotype pairs for each subject

nrep

Calculate a score test statistic for haplotypes, given case-control
status.  For use in haplo.scan

Haplo Stats is a suite of S-PLUS/R routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The genetic markers are assumed to be codominant (i.e., one-to-one correspondence between their genotypes and their phenotypes), and so we refer to the measurements of genetic markers as genotypes. The main functions in Haplo Stats are:  haplo.em, haplo.glm and haplo.score.

haplo.chistat: Calculate a score test statistic for haplotypes

Description

Usage

Arguments

Value