haplo.scan.sim

Re-ordered vector of case/control status, must be 1 for cases and 0 for controls.

y.reord

List of haplotype information saved from haplo.scan.obs

save.lst

nloci

For simulated data, slide a fixed-width window over each marker locus
and scan all possible haplotypes within the window

Haplo Stats is a suite of S-PLUS/R routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The genetic markers are assumed to be codominant (i.e., one-to-one correspondence between their genotypes and their phenotypes), and so we refer to the measurements of genetic markers as genotypes. The main functions in Haplo Stats are:  haplo.em, haplo.glm and haplo.score.

haplo.scan.sim: For simulated data, slide a fixed-width window over each marker locus and scan all possible haplotypes within the window

Description

Usage

Arguments

Value

See Also