summary.haplo.em

object

Logical. If TRUE, show the alleles of the haplotype pairs, otherwise show
only the recoded values.

show.haplo

To shorten output, print the first 1:nlines rows of the large data frame.

nlines

Optional arguments for the summary method

Display haplotype pairs and their posterior probabilities by subject.
Also display a table with number of max haplotype pairs for a
subject versus how many were kept (max vs. used).

Haplo Stats is a suite of S-PLUS/R routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The genetic markers are assumed to be codominant (i.e., one-to-one correspondence between their genotypes and their phenotypes), and so we refer to the measurements of genetic markers as genotypes. The main functions in Haplo Stats are:  haplo.em, haplo.glm and haplo.score.

summary.haplo.em: Summarize contents of a haplo.em object

Description

Usage

Arguments

Value

See Also