Find beta coefficients for risk haplotypes, for specified r2
Fitted values from haplo.glm fit
Print a haplo.scan object
Create the Control Parameters for the EM Computation of Haplotype
Probabilities, with Progressive Insertion of Loci
Search for a trait-locus by sliding a fixed-width window over each marker locus
and scanning all possible haplotype lengths within the window
convert genotype matrix from 1-column 2-column
HLA Loci and Serologic Response to Measles Vaccination
Create the list of control parameters for simulations in haplo.score
Print the contents of a haplo.score.slide object
Creates an object of class "locus"
Power and sample size for the chi-square distribution
Accessing residuals for haplo.glm fit
Integer Rank Codes for Haplotypes
Compute either power or sample size for haplotype associations with a
quantitative trait.
Score Statistics for Association of Traits with Haplotypes
Merge haplo.score And haplo.group Objects
Print a haplo.group object
Plot a seqhap object
Plot Haplotype Frequencies versus Haplotype Score Statistics
Get a list of objects for haplotype pairs
Compute either power or sample size for haplotype associations in a
case-control study.
Create a group of locus objects from a genotype matrix, assign to
'model.matrix' class.
Analysis of variance for haplo.glm model fit
GLM Regression of Trait on Ambiguous Haplotypes
Plot a haplo.score.slide Object
Print a haplo.score.merge object
Print a haplo.cc object
Sequential Haplotype Scan Association Analysis for Case-Control Data
Score Statistics for Association of Traits with Haplotypes
Simulated data for seqhap examples
Find Location from Mouse Clicks and Print Haplotypes on Plot
variance-covariance matrix of a fitted haplo.glm object
Power and sample size for the F distribution
Internal functions for the HaploStats package. See the help file for
the main functions (haplo.em, haplo.score, haplo.glm) for details on
some of these functions.
Print and summary of a haplo.glm object
Remove rows with NA in covariates, but keep genotypes with NAs
Sets up a model frame for haplo.glm
Print a haplo.score object
Haplotype Association Analysis in a Case-Control design
Compute Generalized Inverse of Input Matrix
consistency checks for x.linked locus
Summarize contents of a haplo.em object
Create list of control parameters for haplo.glm
Set of haplotypes and frequencies for power and sample size
calculations
Frequencies for Haplotypes by Grouping Variable
Print contents of a haplo.em object
Print a nice banner
EM Computation of Haplotype Probabilities, with Progressive Insertion
of Loci
Counts of Total Haplotype Pairs Produced by Genotypes
Summarize Full Haplotype Enumeration on Genotype Matrix
Louis Information for haplo.glm
Build a design matrix for haplotypes
Compute engine for haplotype EM algorithm