x.sexcheck

Given an x.linked locus object and a vector of gender codes, the
function will check to make sure the gender codes match the codes used
to originally define the locus, and that no individuals defined as
males are heterozygous.

Routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers). The main functions are: haplo.em(), haplo.glm(), haplo.score(), and haplo.power(); all of which have detailed examples in the vignette.

Jason Sinnwell

haplo.stats

Statistical Analysis of Haplotypes with Traits and Covariates
when Linkage Phase is Ambiguous

x.sexcheck function

<dl><dt>x</dt>
<dd>an object of class locus</dd><dt>sex</dt>
<dd>a vector of codes identifying the gender of each individual contained
in the locus object</dd><dt>stop</dt>
<dd>if T , any warnings are converted to errors and execution is
halted immediately</dd></dl>

Arguments

consistency checks for x.linked locus — x.sexcheck

<dl>

<dt>x</dt>
<dd>an object of class locus</dd>

<dt>sex</dt>
<dd>a vector of codes identifying the gender of each individual contained
in the locus object</dd>

<dt>stop</dt>
<dd>if T , any warnings are converted to errors and execution is
halted immediately</dd>

</dl>

x.sexcheck: consistency checks for x.linked locus

Description

Usage

Value

Arguments

See Also

Examples