harmony

Algorithm for single cell integration.

Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al <doi:10.1038/s41592-019-0619-0>. Package includes a standalone Harmony function and interfaces to external frameworks.

Ilya Korsunsky

Fast, Sensitive, and Accurate Integration of Single Cell Data

Nghia Millard

Jean Fan

Kamil Slowikowski

Miles Smith

Soumya Raychaudhuri

harmony function

<ol>
<li>?HarmonyMatrix to run Harmony on gene expression or PCA 
embeddings matrix.</li>
<li>?RunHarmony to run Harmony on Seurat objects.</li>
</ol>

Usage

<ol>
<li>Report bugs at <a href="https://github.com/immunogenomics/harmony/issues">https://github.com/immunogenomics/harmony/issues</a></li>
<li>Read the manuscript
<a href="https://www.nature.com/articles/s41592-019-0619-0">online</a>.</li>
</ol>

harmony: Harmony: fast, accurate, and robust single cell integration.

Description

Arguments

Usage

Useful links