⚠️There's a newer version (1.2.4) of this package.Take me there.

harmony (version 1.0.1)

Fast, Sensitive, and Accurate Integration of Single Cell Data

Description

Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al . Package includes a standalone Harmony function and interfaces to external frameworks.

Copy Link

Version

Install

install.packages('harmony')

Monthly Downloads

15,611

Version

1.0.1

License

GPL-3

Maintainer

Ilya Korsunsky

Last Published

September 20th, 2023

Functions in harmony (1.0.1)

RunHarmony

Run harmony algorithm generic function

pbmc.ctrl

Gene expression data of control PBMC from Kang et al. 2017. This contains a sample of 1000 cells from that condition and is used for the Seurat Vignette.

RunHarmony.default

Main Harmony interface

harmony

Harmony: fast, accurate, and robust single cell integration.

harmony_options

Set advanced options for RunHarmony

Same as cell_lines but smaller (300 cells).

cell_lines

List of metadata table and scaled PCs matrix

pbmc.stim

Gene expression data of stimulated PBMC from Kang et al. 2017. This contains a sample of 1000 cells from that condition and is used for the Seurat Vignette.