harmony

harmony-package

Algorithm for single cell integration.

Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al <doi.org/10.1101/461954>. Package includes a standalone Harmony function and interfaces to external frameworks.

Ilya Korsunsky

Fast, Sensitive, and Accurate Integration of Single Cell Data

Nghia Millard

Miles Smith

Soumya Raychaudhuri

harmony function

<ol>
<li>?HarmonyMatrix to run Harmony on gene expression or PCA 
embeddings matrix.</li>
<li>?RunHarmony to run Harmony on Seurat or SingleCellExperiment objects.</li>
</ol>

Usage

<ol>
<li>Report bugs at <a href="https://github.com/immunogenomics/harmony/issues">https://github.com/immunogenomics/harmony/issues</a></li>
<li>Read the manuscript
<a href="https://www.biorxiv.org/content/10.1101/461954v2">online</a>.</li>
</ol>

harmony: Harmony: fast, accurate, and robust single cell integration.

Description

Arguments

Usage

Useful links