{"Package":"harmony","Title":"Fast, Sensitive, and Accurate Integration of Single Cell Data","Version":"1.2.0","Authors@R":"c(\nperson(\"Ilya\", \"Korsunsky\", email = \"ilya.korsunsky@gmail.com\",\nrole = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0003-4848-3948\")),\nperson(\"Martin Hemberg\", email = \"mhemberg@bwh.harvard.edu\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0001-8895-5239\")),\nperson(\"Nikolaos Patikas\", email = \"nik.patik@gmail.com\",\nrole = c(\"aut\", \"ctb\"), comment = c(ORCID = \"0000-0002-3978-0134\")),\nperson(\"Hongcheng Yao\", email = \"hongchengyaonk@gmail.com\",\nrole = c(\"aut\", \"ctb\"), comment = c(ORCID = \"0000-0002-0743-4835\")),\nperson(\"Nghia\", \"Millard\", email = \"nmillard@g.harvard.edu\",\nrole = \"aut\", comment = c(ORCID = \"0000-0002-0518-7674\")),\nperson(\"Jean\", \"Fan\", email = \"jeanfan@fas.harvard.edu\",\nrole = c(\"aut\", \"ctb\"), comment = c(ORCID = \"0000-0002-0212-5451\")),\nperson(\"Kamil\", \"Slowikowski\", email = \"kslowikowski@gmail.com\",\nrole = c(\"aut\", \"ctb\"), comment = c(ORCID = \"0000-0002-2843-6370\")),\nperson(\"Miles\", \"Smith\",\nrole = c(\"ctb\")),\nperson(\"Soumya\", \"Raychaudhuri\",\nrole = c(\"aut\"), comment = c(ORCID = \"0000-0002-1901-8265\"))\n)","Description":"Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al . Package includes a standalone Harmony function and interfaces to external frameworks.","URL":"software.broadinstitute.org/harmony","License":"GPL-3","Encoding":"UTF-8","RoxygenNote":"7.2.3","Depends":"R(>= 3.5.0), Rcpp","LazyData":"true","LazyDataCompression":"gzip","LinkingTo":"Rcpp, RcppArmadillo, RcppProgress","Imports":"dplyr, cowplot, ggplot2, Matrix, methods, tibble, rlang,\nRhpcBLASctl","Suggests":"SingleCellExperiment, Seurat (>= 4.1.1), testthat, knitr,\nrmarkdown, ggthemes, ggrepel, patchwork, tidyverse, tidyr,\ndata.table","VignetteBuilder":"knitr","NeedsCompilation":"yes","Packaged":"2023-11-28 23:29:19 UTC; main","Author":"Ilya Korsunsky [cre, aut] (),\nMartin Hemberg [aut] (),\nNikolaos Patikas [aut, ctb] (),\nHongcheng Yao [aut, ctb] (),\nNghia Millard [aut] (),\nJean Fan [aut, ctb] (),\nKamil Slowikowski [aut, ctb] (),\nMiles Smith [ctb],\nSoumya Raychaudhuri [aut] ()","Maintainer":"Ilya Korsunsky ","Repository":"CRAN","Date/Publication":"2023-11-29 08:30:04 UTC","repoType":"cran","tarballUrl":"ftp://cran.r-project.org/pub/R/src/contrib/harmony_1.2.0.tar.gz","jsonAuthors":[{"name":"Ilya Korsunsky","email":"ilya.korsunsky@gmail.com","maintainer":true},{"name":"Martin Hemberg ","email":"mhemberg@bwh.harvard.edu","maintainer":false},{"name":"Nikolaos Patikas ","email":"nik.patik@gmail.com","maintainer":false},{"name":"Hongcheng Yao ","email":"hongchengyaonk@gmail.com","maintainer":false},{"name":"Nghia Millard","email":"nmillard@g.harvard.edu","maintainer":false},{"name":"Jean Fan","email":"jeanfan@fas.harvard.edu","maintainer":false},{"name":"Kamil Slowikowski","email":"kslowikowski@gmail.com","maintainer":false},{"name":"Miles Smith","email":null,"maintainer":false},{"name":"Soumya Raychaudhuri","email":null,"maintainer":false}],"readme":"","jobInfo":{"package":"harmony","version":"1.2.0","parsingStatus":"success","parserVersion":2,"parsedAt":"2023-11-29T10:30:09+0000"}}

Fast, Sensitive, and Accurate Integration of Single Cell Data

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Functions in harmony (1.2.0)