harmony

Algorithm for single cell integration.

Implementation of the Harmony algorithm for single cell integration, described in Korsunsky et al <doi:10.1038/s41592-019-0619-0>. Package includes a standalone Harmony function and interfaces to external frameworks.

Ilya Korsunsky

Fast, Sensitive, and Accurate Integration of Single Cell Data

Martin Hemberg

Nikolaos Patikas

Hongcheng Yao

Nghia Millard

Jean Fan

Kamil Slowikowski

Miles Smith

Soumya Raychaudhuri

harmony function

?RunHarmony to run Harmony on cell embeddings matrix, Seurat or
SingleCellExperiment objects.

Usage

<ol>
<li>Report bugs at <a href="https://github.com/immunogenomics/harmony/issues">https://github.com/immunogenomics/harmony/issues</a></li>
<li>Read the manuscript
tools:::Rd_expr_doi("10.1038/s41592-019-0619-0")</li>
</ol>

Useful links

Harmony: fast, accurate, and robust single cell integration. — harmony

?RunHarmony to run Harmony on cell embeddings matrix, Seurat or
SingleCellExperiment objects.

<ol>
<li>Report bugs at <a href='https://github.com/immunogenomics/harmony/issues'>https://github.com/immunogenomics/harmony/issues</a></li>
<li>Read the manuscript
tools:::Rd_expr_doi("10.1038/s41592-019-0619-0")</li>
</ol>

harmony: Harmony: fast, accurate, and robust single cell integration.

Description

Arguments

Usage

Useful links