GWAS_data_from_gwaspoly

Extracts GWAS results and chromosome length from GWASpoly output.

Generates HIDECAN plots that summarise and combine
the results of genome-wide association studies (GWAS) and transcriptomics
differential expression analyses (DE), along with manually curated candidate genes of interest. The HIDECAN plot
is presented in Angelin-Bonnet et al. (2023) (currently in review).

Olivia Angelin-Bonnet

hidecan

Create HIDECAN Plots for Visualising Genome-Wide Association
Studies and Differential Expression Results

GWAS_data_from_gwaspoly function

<dl><dt>gwaspoly_output</dt>
<dd>A <code>GWASpoly.fitted</code> or <code>GWASpoly.thresh</code> object
(returned by <code>GWASpoly::GWASpoly()</code> or <code>GWASpoly::set.threshold()</code> functions).</dd>
<dt>traits</dt>
<dd>Character vector, traits for which GWAS results should be
extracted. If <code>NULL</code> (default value), all traits present are considered.</dd>
<dt>models</dt>
<dd>Character vector, genetic models for which GWAS results should be
extracted. If <code>NULL</code> (default value), all genetic models present are considered.</dd></dl>

Arguments

Extracts information from GWASpoly output — GWAS_data_from_gwaspoly

<dl>

<dt>gwaspoly_output</dt>
<dd>A <code>GWASpoly.fitted</code> or <code>GWASpoly.thresh</code> object
(returned by <code>GWASpoly::GWASpoly()</code> or <code>GWASpoly::set.threshold()</code> functions).</dd>


<dt>traits</dt>
<dd>Character vector, traits for which GWAS results should be
extracted. If <code>NULL</code> (default value), all traits present are considered.</dd>


<dt>models</dt>
<dd>Character vector, genetic models for which GWAS results should be
extracted. If <code>NULL</code> (default value), all genetic models present are considered.</dd>

</dl>

GWAS_data_from_gwaspoly: Extracts information from GWASpoly output

Description

Usage

Value

Arguments