hierBipartite (version 0.0.2)

getSignificantMergedGroups: Select Significant Results from 'HierBipartite'

Description

Selects clusters from bipartite graph-based hierarchical clustering with p-value less than or equal to a p-value cutoff.

Usage

getSignificantMergedGroups(results, p = 0.05)

Arguments

results

list of results from bipartite graph-based hierarchical clustering

p

p-value cutoff

Value

list of results from bipartite graph-based hierarchical clustering, but only with clusters with p-value at or below p-value cutoff

Examples

# NOT RUN {
# sample bipartite graph-based hierarchical clustering of three groups
data(ctrp2)

groups = ctrp2$groups
X = ctrp2$X
Y = ctrp2$Y

groupNames = names(groups)
groupSmall = groups[groupNames[1:3]]

# }
# NOT RUN {
result = hierBipartite(X, Y, groupSmall)

# set fictitious p-values, with one cluster with p-value less than the cutoff
# and the other not
result$nodePvals = list(0.03, 0.12)
getSignificantMergedGroups(result, p = 0.05)
# }
# NOT RUN {
# }