generate initial values for misID model if not already specified by user
generate_inits_misID(DM.hab.pois, DM.hab.bern, DM.det, N.hab.pois.par,
N.hab.bern.par, G.transect, Area.trans, Area.hab, Mapping, point.ind,
spat.ind, grp.mean, misID, misID.mat, N.par.misID)a list of design matrices for the Poisson habitat model (elements are named sp1,sp2, etc.)
If a hurdle model, a list of design matrices for the Bernoulli habitat model (elements are named sp1,sp2, etc.) (NULL if not hurdle)
design matrix for detection model
vector giving number of parameters in the Poisson habitat model for each species
vector giving number of parameters in the Bernoulli habitat model for each species (NULL if not hurdle)
a matrix of the number of groups of animals in area covered by each transect; each row gives a separate species
a vector giving the proportion of a strata covered by each transect
a vector of the relative areas of each strata
a vector mapping each transect to it's associated strata
is point independence assumed (TRUE/FALSE)
is spatial independence assumed? (TRUE/FALSE)
a vector giving the pois1 parameter for group size (one entry for each species)
if TRUE, indicates that misidentification is incorporated into modeling
a matrix specifying which elements of the misID matrix are linked to model equations
a vector giving the number of parameters for each misID model (in multinomial logit space)
a list of initial parameter values