Usage
## S3 method for class 'HierarchicalSet':
plot(x, label = TRUE, type = "dendrogram",
transform = NULL, style = theme_bw(), quantiles = 0, upperBound = 1,
tension = 0.8, alpha = 1, circular = TRUE, showHierarchy = !circular,
evenHierarchy = circular, ...)
Arguments
x
A hierarchicalSet object to plot.
label
logical. Should sets be labeled.
type
The type of plot to produce. See detail. The name of the type may
be abbreviated.
transform
A string giving the scale transformation or a
trans object. style
A ggplot2 theme to use as basis for the plot. Defaults to
theme_bw().
quantiles
The quantiles to split outlying elements up in for
outlying_elements plot. If length is above one a facetted plot will be
produced.
upperBound
The upper quantile threshold to include. Defaults to 1
(i.e. everything is included)
tension
The tension used for the hierarchical edge bundles in
outlying_elements plot. Defaults to 0.8
alpha
The alpha level for the edge bundles. Defaults to 1
circular
Logical. Should the hierarchical edge bundles be laid out in
a circular layout.
showHierarchy
Logical. For intersectionStack plots, should a
dendrogram mapping union sizes be drawn above the icicle plot. For
outlying_elements plots should a dendrogram be plotted below (for circular) or
to the left (for linear) of the edge bundles.
evenHierarchy
Logical. Should the heights of the dendrogram used for
constructing the edge bundles be evened out.