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hisse (version 1.5)

Hidden State Speciation and Extinction

Description

Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.

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Version

Install

install.packages('hisse')

Monthly Downloads

382

Version

1.5

License

GPL (>= 2)

Maintainer

Jeremy Beaulieu

Last Published

March 19th, 2016

Functions in hisse (1.5)

hisse

Hidden State Speciation and Extinction

MarginRecon

Ancestral State Estimation based on Marginal Reconstruction

BisseToHisse

hisse.null4

Four state trait-independent Hidden State Speciation and Extinction

TransMatMaker

Transition Rate matrix generator

SimToPhylo

Convert simulated result to a tree

SimulateHisse

Simulate under a HiSSE model

SupportRegion

Adaptive Sampling of the Likelihood Surface

plot.hisse.states

Plotting function hisse.states objects