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hisse (version 1.6)

Hidden State Speciation and Extinction

Description

Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.

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Version

Install

install.packages('hisse')

Monthly Downloads

382

Version

1.6

License

GPL (>= 2)

Maintainer

Jeremy Beaulieu

Last Published

March 30th, 2016

Functions in hisse (1.6)

hisse.null4

Four state trait-independent Hidden State Speciation and Extinction

hisse

Hidden State Speciation and Extinction

plot.hisse.states

Plotting function hisse.states objects

BisseToHisse

SimulateHisse

Simulate under a HiSSE model

TransMatMaker

Transition Rate matrix generator

SimToPhylo

Convert simulated result to a tree

SupportRegion

Adaptive Sampling of the Likelihood Surface

MarginRecon

Ancestral State Estimation based on Marginal Reconstruction