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hisse is currently in review; see the manuscript here.

Installation

Stable version from CRAN

install.packages("hisse")

Development version from GitHub

Windows users install Rtools first.

install.packages("devtools")
devtools::install_github("thej022214/hisse")
library('hisse')

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Version

Install

install.packages('hisse')

Monthly Downloads

382

Version

1.7

License

GPL (>= 2)

Maintainer

Jeremy Beaulieu

Last Published

June 14th, 2016

Functions in hisse (1.7)

TransMatMaker

Transition Rate matrix generator
plot.hisse.states

Plotting function hisse.states objects
MarginRecon

Ancestral State Estimation based on Marginal Reconstruction
SupportRegion

Adaptive Sampling of the Likelihood Surface
SimToPhylo

Convert simulated result to a tree
hisse

Hidden State Speciation and Extinction
SimulateHisse

Simulate under a HiSSE model
BisseToHisse

BisseToHisse
hisse.null4

Four state trait-independent Hidden State Speciation and Extinction