Hidden Geographic State Speciation and Extinction
TranslateParsMakerGeoHiSSE
Key to translate GeoHiSSE into ClaSSE
Multicharacter Hidden State Speciation and Extinction
fast Hidden Geographic State Speciation and Extinction
Compute model weights
BisseToHisse
Character-free State Speciation and Extinction
Simulate under a GeoHiSSE model
Hidden State Speciation and Extinction
Character-free State Speciation and Extinction searching greedily
Ancestral State Estimation based on Marginal Reconstruction for
the MiSSE models.
Plotting function geohisse.states objects
Model average rates at tips and nodes
Ancestral State Estimation based on Marginal Reconstruction
Ancestral State Estimation based on Marginal Reconstruction for
the GeoSSE and GeoHiSSE models.
Model averaged equilibrium frequencies
Model average equlibrium frequencies
fast Ancestral State Estimation based on Marginal Reconstruction for
the GeoSSE and GeoHiSSE models.
Ancestral State Estimation based on Marginal Reconstruction for
the MuSSE and MuHiSSE models.
Transition Rate matrix generator
Adaptive Sampling of the Likelihood Surface under MuHiSSE
Four state trait-independent Hidden State Speciation and Extinction
Simulate under a HiSSE model
Adaptive Sampling of the Likelihood Surface
Export likelihood function for the HiSSE model
Adaptive Sampling of the Likelihood Surface under GeoSSE
Adaptive Sampling of the Likelihood Surface under MiSSE
Plotting function muhisse.states objects
Transition Rate matrix generator for the GeoHiSSE model
Transition Rate matrix generator for the MuHiSSE model
Convert simulated result to a tree
Plotting function hisse.states objects
Plotting function geohisse.states objects