Tree_Size_Ests

Estimated sizes, individual growth parameters, and population-level hyper-parameters
for Garcinia recondita fit with a Canham growth function hierarchical model.
The data used to fit the model is the Tree_Size_Data object.

datasets

Wrapper for Stan that offers a number of in-built models to implement a hierarchical Bayesian longitudinal model for repeat observation data. Model choice selects the differential equation that is fit to the observations. Single and multi-individual models are available. O'Brien et al. (2024) <doi:10.1111/2041-210X.14463>.

Tess O'Brien

hmde

Hierarchical Methods for Differential Equations

Daniel Falster

Fonti Kar

David Warton

Tree_Size_Ests function

<div class="section" id="tree-size-ests">
<h3><code>Tree_Size_Ests</code></h3>
A list with 5 elements:<dl>
<dt>model</dt>
<dd>A character string giving the model name - Canham with multiple individuals.</dd><dt>measurement_data</dt>
<dd>A tibble with 5 columns that gives information on size observations and estimates.</dd><dt>individual_data</dt>
<dd>A tibble with 13 columns that gives posterior estimates for individual growth parameters.</dd><dt>error_data</dt>
<dd>A tibble with 5 columns that gives posterior estimates of the error parameter.</dd><dt>population_data</dt>
<dd>A tibble with 5 columns that gives posterior estimates for population-level hyper-parameters.</dd>
</dl></div>

Format

Garcinia recondita model estimates - Barro Colorado Island data — Tree_Size_Ests

<div class='section' id='tree-size-ests'>
<h3><code>Tree_Size_Ests</code></h3>


A list with 5 elements:<dl>
<dt>model</dt>
<dd>A character string giving the model name - Canham with multiple individuals.</dd>

<dt>measurement_data</dt>
<dd>A tibble with 5 columns that gives information on size observations and estimates.</dd>

<dt>individual_data</dt>
<dd>A tibble with 13 columns that gives posterior estimates for individual growth parameters.</dd>

<dt>error_data</dt>
<dd>A tibble with 5 columns that gives posterior estimates of the error parameter.</dd>

<dt>population_data</dt>
<dd>A tibble with 5 columns that gives posterior estimates for population-level hyper-parameters.</dd>


</dl>

</div>

Tree_Size_Ests: Garcinia recondita model estimates - Barro Colorado Island data

Description

Usage

Arguments

Format

`Tree_Size_Ests`