hommel v1.5


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Methods for Closed Testing with Simes Inequality, in Particular Hommel's Method

Provides methods for closed testing using Simes local tests. In particular, calculates adjusted p-values for Hommel's multiple testing method, and provides lower confidence bounds for true discovery proportions. A robust but more conservative variant of the closed testing procedure that does not require the assumption of Simes inequality is also implemented. The methods have been described in detail in Goeman et al (2016) <arXiv:1611.06739v2>.

Functions in hommel

Name Description
hommel Calculates adjusted p-values of Hommel's method efficiently.
Local test P-values and adjusted p-values of local tests
True Discoveries Confidence bounds for the number of discoveries
Concentration set Concentration set calculation
hommel-package Methods for closed testing with Simes inequality, in particular Hommel's method
hommel class Class "hommel" for storing the result of Hommel's multiple testing method.
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Type Package
Date 2019-11-25
License GPL (>= 2)
LinkingTo Rcpp
NeedsCompilation yes
Packaged 2019-12-02 19:19:07 UTC; Jelle
Repository CRAN
Date/Publication 2019-12-02 20:30:02 UTC

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