hommel v1.5

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Methods for Closed Testing with Simes Inequality, in Particular Hommel's Method

Provides methods for closed testing using Simes local tests. In particular, calculates adjusted p-values for Hommel's multiple testing method, and provides lower confidence bounds for true discovery proportions. A robust but more conservative variant of the closed testing procedure that does not require the assumption of Simes inequality is also implemented. The methods have been described in detail in Goeman et al (2016) <arXiv:1611.06739v2>.

Functions in hommel

 Name Description hommel Calculates adjusted p-values of Hommel's method efficiently. Local test P-values and adjusted p-values of local tests True Discoveries Confidence bounds for the number of discoveries Concentration set Concentration set calculation hommel-package Methods for closed testing with Simes inequality, in particular Hommel's method hommel class Class "hommel" for storing the result of Hommel's multiple testing method. No Results!