homologene

A vector of gene symbols or NCBI ids

genes

taxid of the species that the input genes are coming from

inTax

taxid of the species that you are seeking homology

outTax

Given a list of genes and a taxid, returns a data frame inlcuding the genes and their corresponding homologues

A wrapper for the homologene database by the National Center for
Biotechnology Information ('NCBI'). It allows searching for gene homologs across
species. Data in this package can be found at <ftp://ftp.ncbi.nih.gov/pub/HomoloGene/build68/>.
The package also includes an updated version of the homologene database where
gene identifiers and symbols are replaced with their latest (at the time of
submission) version and functions to fetch latest annotation data to keep updated.

homologene: Get homologues of given genes

Description

Usage

Arguments

Examples