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hsphase (version 1.2.3)
Phasing and imputation of half-sib families using SNP data
Description
Identification of recombination events, haplotype reconstruction and sire imputation using half-sib family SNP data
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Install
install.packages('hsphase')
Monthly Downloads
309
Version
1.2.3
License
GPL (>= 3)
Maintainer
Mohammad Ferdosi
Last Published
October 26th, 2013
Functions in hsphase (1.2.3)
Search functions
rpoh
Reconstruct Pedigree Based on Matrix of Opposing Homozygotes
bmh
Block Partitioning
impute
Impute of Low Density SNP Marker to High Density (Parental strand)
co
Crossover Detection
hh
Heatmap of Half-sibs
hbp
Haplotype Blocks of Phased Data
readGenotype
Read and Check the Genotype File
pedigreeNaming
Fix Pedigree Errors
pm
Probability Matrix
hsphase-package
Phasing, Sire Imputation and Recombination Events for Half-sib Families
genotypes
Example Genotype Data Set
ssp
Sire Imputation and Phasing
ohg
Matrix of Opposing Homozygotes
para
Parallel Analysis of Data
imageplot
Image Plot of Blocking Structure
phf
Half-Sib Family Phasing
rplot
Recombination Plot
recombinations
Recombination Number
pedigree
Example Pedigree
map
Example Map File
hss
Half-sib Family Splitter
ohd
Opposing Homozygote Detection
cs
Chromosome Splitter
aio
All-in-one Phasing