impute

<code>Matrix</code>
half-sib paternal strand (output of {<code>phf</code>} - the matrix should have rownames which are the sample IDs and colnames which are the SNP names)

halfsib_paternal_ld

<code>Matrix</code>
halfsib block structure (Output of <code>bmh</code>)

halfsib_block_ld

<code>Matrix</code>
imputed sire (output of {<code>ssp</code>}  - the matrix should have rownames which are the sample IDs and colnames which are the SNP names)

sire_ld

<code>Matrix</code>
haplotype of sire (this parameter can be sequence data or any phased sire - the matrix should have rownames which are the sample IDs and colnames which are the SNP names)

sire_hd

Impute the paternal strand from low density to high density utilising high density sire haplotype.

Low_Density

High_Density

Identification of recombination events, haplotype reconstruction and sire imputation using half-sib family SNP data

impute: Impute of Low Density SNP Marker to High Density (Paternal Strand)

Description

Usage

Arguments

Value

See Also