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hsphase (version 1.2.5)
Phasing and imputation of half-sib families using SNP data
Description
Identification of recombination events, haplotype reconstruction and sire imputation using half-sib family SNP data
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2.0.3
2.0.2
2.0.1
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1.2.6
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1.2.4
1.2.3
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Install
install.packages('hsphase')
Monthly Downloads
309
Version
1.2.5
License
GPL (>= 3)
Maintainer
Mohammad Ferdosi
Last Published
February 21st, 2014
Functions in hsphase (1.2.5)
Search functions
hh
Heatmap of Half-sibs
ohplot
Opposing Homozygotes Plot
ohg
Matrix of Opposing Homozygotes
genotypes
Example Genotype Data Set
hbp
Haplotype Blocks of Phased Data
hsphase-package
Phasing, Sire Imputation and Recombination Events for Half-sib Families
pedigreeNaming
Fix Pedigree Errors
rplot
Recombination Plot
rpoh
Reconstruct Pedigree Based on Matrix of Opposing Homozygotes
co
Crossover Detection
imageplot
Image Plot of Blocking Structure
map
Example Map File
ssp
Sire Imputation and Phasing
aio
All-in-one Phasing
hss
Half-sib Family Splitter
readGenotype
Read and Check the Genotype File
para
Parallel Analysis of Data
pedigree
Example Pedigree
pm
Probability Matrix
bmh
Block Partitioning
recombinations
Recombination Number
pogc
Parent Offspring Group Constructor
phf
Half-Sib Family Phasing
ohd
Opposing Homozygote Detection
impute
Impute of Low Density SNP Marker to High Density (Paternal Strand)
cs
Chromosome Splitter