.hblock

Internal wrapper around the native C routine <code>hblock</code>. It transforms a
BMH result matrix into a block representation, with an optional maximum block
size constraint.

Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data.

Mohammad Ferdosi

hsphase

Phasing, Pedigree Reconstruction, Sire Imputation and
Recombination Events Identification of Half-sib Families Using
SNP Data

Cedric Gondro

.hblock function

<dl><dt>bmhResult</dt>
<dd>A numeric/integer matrix containing BMH results (block
matching/haplotype-block intermediate output). Must be a matrix.</dd>
<dt>MaxBlock</dt>
<dd>Integer scalar. Maximum block size (default: 400).</dd></dl>

Arguments

Build haplotype blocks from a BMH result matrix (native routine wrapper) — .hblock

<dl>

<dt>bmhResult</dt>
<dd>A numeric/integer matrix containing BMH results (block
matching/haplotype-block intermediate output). Must be a matrix.</dd>


<dt>MaxBlock</dt>
<dd>Integer scalar. Maximum block size (default: 400).</dd>

</dl>

.hblock: Build haplotype blocks from a BMH result matrix (native routine wrapper)

Description

Usage

Value

Arguments

Details