Detects possible crossover segments by comparing pairs of individuals in a half-sib family.

crossover

Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data.

Mohammad Ferdosi

hsphase

Phasing, Pedigree Reconstruction, Sire Imputation and
Recombination Events Identification of Half-sib Families Using
SNP Data

Cedric Gondro

co function

<dl> <dt>genotypeMatrix</dt>
<dd><code>matrix</code>. Half-sib genotypes (one individual per row; SNPs in columns ordered by map position).
 Genotypes must be numeric: <code>0, 1, 2</code> for <code>AA, AB, BB</code> and <code>9</code> for missing.</dd></dl>

Arguments

Crossover Detection — co

<dl>

 <dt>genotypeMatrix</dt>
<dd><code>matrix</code>. Half-sib genotypes (one individual per row; SNPs in columns ordered by map position).
 Genotypes must be numeric: <code>0, 1, 2</code> for <code>AA, AB, BB</code> and <code>9</code> for missing.</dd>

</dl>

co: Crossover Detection

Description

Usage

Value

Arguments

Examples