Creates a heatmap of a half-sib dataset using an opposing-homozygotes (OH) matrix, with optional sidebars showing inferred and/or real pedigree groupings.

Heatmap

pedigree

Identification of recombination events, haplotype reconstruction, sire imputation and pedigree reconstruction using half-sib family SNP data.

Mohammad Ferdosi

hsphase

Phasing, Pedigree Reconstruction, Sire Imputation and
Recombination Events Identification of Half-sib Families Using
SNP Data

Cedric Gondro

hh function

<dl> <dt>oh</dt>
<dd><code>matrix</code>. Opposing-homozygotes matrix (e.g. output of <code>ohg</code>).</dd> <dt>inferredPedigree</dt>
<dd><code>matrix</code>. Inferred pedigree (e.g. output of <code>rpoh</code>).</dd> <dt>realPedigree</dt>
<dd><code>matrix</code>. Original pedigree.</dd> <dt>pedOnly</dt>
<dd><code>logical</code>. If <code>TRUE</code>, consider only individuals that exist in the real pedigree.</dd></dl>

Arguments

The function uses colors generated by the getcol function in the made4 package (Aedin Culhane).

Author

Heatmap of Half-sibs — hh

<dl>

 <dt>oh</dt>
<dd><code>matrix</code>. Opposing-homozygotes matrix (e.g. output of <code>ohg</code>).</dd>

 <dt>inferredPedigree</dt>
<dd><code>matrix</code>. Inferred pedigree (e.g. output of <code>rpoh</code>).</dd>

 <dt>realPedigree</dt>
<dd><code>matrix</code>. Original pedigree.</dd>

 <dt>pedOnly</dt>
<dd><code>logical</code>. If <code>TRUE</code>, consider only individuals that exist in the real pedigree.</dd>

</dl>

hh: Heatmap of Half-sibs

Description

Usage

Value

Arguments

Author

See Also

Examples