hsphase (version 3.0.0)

switchDetector: Switch Detector

Description

Detect switch errors in the haplotypes of a half-sib family.

Usage

switchDetector(groupMatrix)

Value

A list of integer vectors. The list length equals the number of individuals. Each vector contains the locations of detected switch errors for that individual.

Arguments

groupMatrix

matrix. Group matrix generated by groupMatSingle.

See Also

groupMatSingle

Examples

haplotype <- .simulateHalfsib(8, 3000, type = "haplotype")$phased
switches <- list(2500,0,0,1200,c(1000,2000),500,2000,0)

haplotype2 <- addSwitch(haplotype, switches, 0)
gMat <- groupMatSingle(haplotype2, 100, 2, "haplotype")

switchDetector(gMat)