plot.hstats_matrix: Plots "hstats_matrix" Object

Description

Plot method for objects of class "hstats_matrix".

Usage

# S3 method for hstats_matrix
plot(
  x,
  top_m = 15L,
  fill = getOption("hstats.fill"),
  swap_dim = FALSE,
  viridis_args = getOption("hstats.viridis_args"),
  facet_scales = "fixed",
  ncol = 2L,
  rotate_x = FALSE,
  err_type = c("SE", "SD", "No"),
  ...
)

Value

An object of class "ggplot".

Arguments

x: An object of class "hstats_matrix".
top_m: How many rows should be plotted? Inf for all.
fill: Fill color of ungrouped bars. The default equals the global option hstats.fill = "#fca50a". To change the global option, use options(stats.fill = new value).
swap_dim: Switches the role of grouping and facetting (default is FALSE).
viridis_args: List of viridis color scale arguments, see [ggplot2::scale_color_viridis_d()]. The default points to the global option hstats.viridis_args, which corresponds to list(begin = 0.2, end = 0.8, option = "B"). E.g., to switch to a standard viridis scale, you can change the default via options(hstats.viridis_args = list()), or set viridis_args = list().
facet_scales: Value passed as scales argument to [ggplot2::facet_wrap()].
ncol: Passed to [ggplot2::facet_wrap()].
rotate_x: Should x axis labels be rotated by 45 degrees?
err_type: The error type to show, by default "SE" (standard errors). Set to "SD" for standard deviations (SE * sqrt(m_rep)), or "No" for no bars. Currently, supported only for perm_importance().
...: Passed to ggplot2::geom_bar().