chrm

chrm,ChipInfo-method

chrm,GRanges-method

chrm,RangedData-method

object


Return the list of chromosome values from a RangedData object


Utilises GRanges, data.frame or IRanges objects. Integrates gene annotation for ImmunoChip (or your custom chip) with function calls. Intuitive wrappers for annotation lookup (gene lists, exon ranges, etc) and conversion (e.g, between build 36 and 37 coordinates). Conversion between ensembl and HGNC gene ids, chip ids to rs-ids for SNP-arrays. Retrieval of chromosome and position for gene, band or SNP-ids, or reverse lookup. Simulation functions for ranges objects.

Nicholas Cooper

humarray

Simplify Analysis and Annotation of Human Microarray Datasets

chrm function

Chromosome method for RangedData objects

chrm: Chromosome method for RangedData objects

Description

Usage

Arguments

Value