get.t1d.regions

GRanges or RangedData object, only use if you need to provide for a
build other than 36 or 37 (hg18/hg19).

dense.reg

e.g, 36/hg18 or 37/hg19, if left as NULL current getOption('ucsc') will
be used.

build

logical, set to TRUE if you wish to get the set of NON-T1D regions.

invert


This function uses a full list of ichip dense regions combined with a list of t1d
SNPs to get the t1d regions. For type 1 diabetes researchers.


Utilises GRanges, data.frame or IRanges objects. Integrates gene annotation for ImmunoChip (or your custom chip) with function calls. Intuitive wrappers for annotation lookup (gene lists, exon ranges, etc) and conversion (e.g, between build 36 and 37 coordinates). Conversion between ensembl and HGNC gene ids, chip ids to rs-ids for SNP-arrays. Retrieval of chromosome and position for gene, band or SNP-ids, or reverse lookup. Simulation functions for ranges objects.

get.t1d.regions: Obtain a listing of known T1D associated genomic regions

Description

Usage

Arguments

Value

Examples