invGRanges

a ranged object, GRanges, RangedData or ChipInfo

logical, TRUE if the ends of ranges should be in the inverted object

inclusive

character, "hg18" or "hg19" (or 36/37) to show which reference to retrieve. The 
default when build is NULL is to use the build from the current ChipInfo annotation

build

logical, whether to add entire chromosomes to the inverted
range object when they are not contained within X

pad.missing.autosomes


Invert a ranged object
Select the empty space between ranges for the whole genome, for instance you may want
to overlap with everything NOT in a set of ranges.


Utilises GRanges, data.frame or IRanges objects. Integrates gene annotation for ImmunoChip (or your custom chip) with function calls. Intuitive wrappers for annotation lookup (gene lists, exon ranges, etc) and conversion (e.g, between build 36 and 37 coordinates). Conversion between ensembl and HGNC gene ids, chip ids to rs-ids for SNP-arrays. Retrieval of chromosome and position for gene, band or SNP-ids, or reverse lookup. Simulation functions for ranges objects.

Nicholas Cooper

humarray

Simplify Analysis and Annotation of Human Microarray Datasets

invGRanges function

Invert a ranged object
Select the empty space between ranges for the whole genome, for instance you may want
to overlap with everything NOT in a set of ranges.

invGRanges: Invert a ranged object Select the empty space between ranges for the whole genome, for instance you may want to overlap with everything NOT in a set of ranges.

Description

Usage

Arguments

Value

Examples