ranged.to.txt

ranges


Takes a RangedData or GRanged object from some annotation lookup functions and converts to standard text
positions, such as what you might see on the UCSC genome browser, such as 
chr1:10,000,234-11,000,567 for a range, or chrX:234,432 for a SNP. Useful for printing
messages, concatenating positions to a single vector, or creating queries for databastes.


Utilises GRanges, data.frame or IRanges objects. Integrates gene annotation for ImmunoChip (or your custom chip) with function calls. Intuitive wrappers for annotation lookup (gene lists, exon ranges, etc) and conversion (e.g, between build 36 and 37 coordinates). Conversion between ensembl and HGNC gene ids, chip ids to rs-ids for SNP-arrays. Retrieval of chromosome and position for gene, band or SNP-ids, or reverse lookup. Simulation functions for ranges objects.

ranged.to.txt: Convert GRanges/RangedData to chr:pos1-pos2 vector

Description

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See Also

Examples