rs.id

rs.id,ChipInfo-method

logical, whether to show 'b' suffixes on rs.ids which
are created in the background to allow duplicate ids to be uniquely
represented for lookup and reference purposes.


Returns the rs-ids for the chip object, e.g, "rs689", etc
Only if these are annotated internally, or else a vector of NAs


Utilises GRanges, data.frame or IRanges objects. Integrates gene annotation for ImmunoChip (or your custom chip) with function calls. Intuitive wrappers for annotation lookup (gene lists, exon ranges, etc) and conversion (e.g, between build 36 and 37 coordinates). Conversion between ensembl and HGNC gene ids, chip ids to rs-ids for SNP-arrays. Retrieval of chromosome and position for gene, band or SNP-ids, or reverse lookup. Simulation functions for ranges objects.

rs.id: Access rs-ids for ChipInfo

Description

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