do.cw

immunobase.has.changed

.rownames3

makePrettyMatrixForCompactPrinting2

.makeNakedMatFromChipInfo

extraColumnSlotNames2

extraColumnSlots2

finitize

minna

maxna

meanna

medianna

sdna

sumna

sortna

ucsc.sanitizer

pduplicated

comma

order.chr

sort_chr

clean.snp.ids

hard.coded.conv

rmv.trail

plot_get_area

add.trail

rsampid

rsnpid

emd.rmv

chrOrder2

chrNames2

toGenomeOrder2

chrInfo2

chrIndices2

chr2

chrInfoGS

chrIndicesGS

chrGS

chrPartitioning2

make.divisor

plotdf

chrnums.to.txt

chrnames.to.num

tidy.extra.chr

gene.duplicate.report

validate.dir.for

substitute.36s

TGORD

TGOGR

egSymb

hg18ToHg19

hg19ToHg18

hg19ToHg38

hg38ToHg19

.updateAllele

 internal

humarray-internal

Utilises GRanges, data.frame or IRanges objects. Integrates gene annotation for ImmunoChip (or your custom chip) with function calls. Intuitive wrappers for annotation lookup (gene lists, exon ranges, etc) and conversion (e.g, between build 36 and 37 coordinates). Conversion between ensembl and HGNC gene ids, chip ids to rs-ids for SNP-arrays. Retrieval of chromosome and position for gene, band or SNP-ids, or reverse lookup. Simulation functions for ranges objects.

humarray-internal: Internal humarray Functions

Description

Arguments

Details